BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB003E12LP1|AL425145
(857 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1619 1638 0.0
>3x_Contig1619
Length = 7770
Score = 1638 bits (822), Expect = 0.0
Identities = 847/859 (98%), Gaps = 2/859 (0%)
Strand = Plus / Minus
Query: 1 gatcataaattggtttcatagataatacttctaaaataaaatctaatggtactaattcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2673 gatcataaattggtttcatagataatacttctaaaataaaatctaatggtactaattcat 2614
Query: 61 tcttttgaaaatatctattagaattaatacaccccgcggctcctcccttcggggggagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2613 tcttttgaaaatatctattagaattaatacaccccgcggctcctcccttcggggggagtc 2554
Query: 121 cgcggggaaagatctaaatttatcttccccccgcggcatcacccaaccctagggttgggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2553 cgcggggaaagatctaaatttatcttccccccgcggcatcacccaaccctagggttgggt 2494
Query: 181 gagccgcggggggctaataataattgaccctctaatgttttatgtaaaccatgttttata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2493 gagccgcggggggctaataataattgaccctctaatgttttatgtaaaccatgttttata 2434
Query: 241 atgataatactagaaaatcacattacaaaatcaatatattttctagtatataatccacta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2433 atgataatactagaaaatcacattacaaaatcaatatattttctagtatataatccacta 2374
Query: 301 tttaacatagttggaaatacttgataatataatctatcagtactagaaatttaaaatcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2373 tttaacatagttggaaatacttgataatataatctatcagtactagaaatttaaaatcta 2314
Query: 361 tatttattactatcttccccgcggactcctcccctttaaagggattaccaggggaggagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2313 tatttattactatcttccccgcggactcctcccctttaaagggattaccaggggaggagc 2254
Query: 421 cgcggggtttataaattttattagtagatttaggtaaatcatataataaactattatcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2253 cgcggggtttataaattttattagtagatttaggtaaatcatataataaactattatcag 2194
Query: 481 gagttcaatttaaaatagtatcttgaatagccttcattaaatcttccccgcggtctcccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2193 gagttcaatttaaaatagtatcttgaatagccttcattaaatcttccccgcggtctcccc 2134
Query: 541 ccgaa--gaggagccgcgggtgaatttatatgttgagatacttctaaacttattttatag 598
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2133 ccgaagggaggagccgcgggtgaatttatatgttgagatacttctaaacttattttatag 2074
Query: 599 ttattgtttatatttttagaaatagctaaatgaccttcagcttcgataaatcctacaata 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2073 ttattgtttatatttttagaaatagctaaatgaccttcagcttcgataaatcctacaata 2014
Query: 659 tattcaatattaattttagaaataatatcatcatattccccscscsgctcgccctaccct 718
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 2013 tattcaatattaattttagaaataatatcatcatattccccgcgcggctcgccctaccct 1954
Query: 719 aaggtagggsgattgcgcgcgggggggartatkgtttgaagaattagtatttaattcttc 778
| ||||||| ||| ||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 1953 acggtagggcgatgccgcgcgggggggagtatggtttgaagaattagtatttaattcttc 1894
Query: 779 atttaatttattacataattctaatttwatatttttagaaattgtagaatcactagtaga 838
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1893 atttaatttattacataattctaatttaatatttttagaaattgtagaatcactagtaga 1834
Query: 839 taatttatatattaataat 857
|||||||||||||||||||
Sbjct: 1833 taatttatatattaataat 1815
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7674
Number of Sequences: 1807
Number of extensions: 7674
Number of successful extensions: 121
Number of sequences better than 1.0e-20: 1
length of query: 857
length of database: 10,358,551
effective HSP length: 16
effective length of query: 841
effective length of database: 10,329,639
effective search space: 8687226399
effective search space used: 8687226399
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.1 bits)